Basic Information
Locus ID:
AsparagusV1_02.711.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 14256020 | 14258436 | + | AsparagusV1_02.711.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.68 | 37,013.70 Da | 38.42 | 87.25 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 262 | 325 | 3.30173E-12 | IPR002048 |
| CDD | cd00051 | EFh | 190 | 249 | 4.79056E-15 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 1 | 142 | 3.0E-35 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 203 | 252 | 1.5E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 259 | 325 | 5.9E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 166 | 325 | 1.58E-40 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 160 | 1.71E-41 | IPR011009 |
| Gene3D | G3DSA:1.10.238.10 | - | 153 | 329 | 6.4E-53 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 152 | 8.0E-42 | - |
| SMART | SM00220 | serkin_6 | 1 | 142 | 5.0E-9 | IPR000719 |
| SMART | SM00054 | efh_1 | 225 | 253 | 0.24 | IPR002048 |
| SMART | SM00054 | efh_1 | 261 | 289 | 0.041 | IPR002048 |
| SMART | SM00054 | efh_1 | 295 | 327 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 189 | 217 | 0.031 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 257 | 292 | 14.290241 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 142 | 28.866587 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 185 | 220 | 12.811786 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 221 | 256 | 9.799083 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 270 | 282 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 234 | 246 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23580.1 | calmodulin-like domain protein kinase 9. unique family of enzymes containing a single polypeptide chain with a kinase domain at the amino terminus and a putative calcium-binding EF hands structure at the carboxyl terminus; recombinant protein is fully active and induced by Ca2+ | 0 |
| RefSeq | XP_020253169.1 | calcium-dependent protein kinase 28-like isoform X1 [Asparagus officinalis] | 0 |
| Q2QX45 | Calcium-dependent protein kinase 28 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK28 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1FLE0 | Calcium-dependent protein kinase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F7110 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.711.V1.1, AsparagusV1_02.729.V1.1 |