Basic Information
Locus ID:
AsparagusV1_02.692.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13690524 | 13736437 | - | AsparagusV1_02.692.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 34,798.07 Da | 48.47 | 99.30 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 230 | 272 | 2.62036E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 21 | 159 | 6.66741E-48 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 1.2E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 80 | 139 | 3.1E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 78 | 151 | 3.14E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 285 | 4.8E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 277 | 2.0E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 17 | 156 | 1.2E-25 | - |
| SMART | SM00184 | ring_2 | 230 | 271 | 6.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 12.651561 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_020252135.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Asparagus officinalis] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FGH3 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F6920 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology