Basic Information
Locus ID:
AsparagusV1_02.691.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 13653959 | 13666585 | - | AsparagusV1_02.691.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 42,044.86 Da | 56.44 | 88.62 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 229 | 272 | 1.72225E-20 | - |
| CDD | cd02123 | PA_C_RZF_like | 14 | 159 | 3.8832E-50 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 5.1E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 71 | 140 | 2.8E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 224 | 287 | 3.28E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 79 | 135 | 3.53E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 153 | 1.6E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 277 | 3.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 230 | 271 | 4.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 12.666314 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_020252134.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Asparagus officinalis] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FHD0 | RING-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F6910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology