Basic Information
Locus ID:
AsparagusV1_02.475.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8475302 | 8489515 | + | AsparagusV1_02.475.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 66,406.83 Da | 53.76 | 62.98 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 2.55043E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 281 | 329 | 2.0E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 3.2E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 2.12E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 3.79E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 215 | 2.51E-19 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 9.5E-85 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 217 | 5.8E-18 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 278 | 339 | 0.061 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 4.4E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 9.258371 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 51.372612 | IPR044066 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
| Coils | Coil | Coil | 594 | 596 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_020252894.1 | LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI7 [Asparagus officinalis] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FHR5 | RBR-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F4750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology