Basic Information
Locus ID:
AsparagusV1_02.433.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7683598 | 7711500 | + | AsparagusV1_02.433.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 105,806.35 Da | 50.62 | 84.08 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 760 | 916 | 1.04856E-60 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 318 | 915 | 5.6E-87 | IPR001394 |
| Pfam | PF06337 | DUSP domain | 39 | 144 | 1.2E-24 | IPR006615 |
| SUPERFAMILY | SSF143791 | DUSP-like | 17 | 144 | 2.22E-27 | IPR035927 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 316 | 918 | 1.22E-109 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 668 | 928 | 1.6E-57 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 157 | 244 | 2.2E-12 | - |
| Gene3D | G3DSA:3.30.2230.10 | - | 5 | 156 | 2.1E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 306 | 536 | 3.3E-67 | - |
| SMART | SM00695 | dusp | 35 | 146 | 5.8E-27 | IPR006615 |
| ProSiteProfiles | PS51283 | DUSP domain profile. | 16 | 143 | 18.667709 | IPR006615 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 318 | 918 | 57.655994 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 860 | 877 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 319 | 334 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 677 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_020252850.1 | ubiquitin carboxyl-terminal hydrolase 5 [Asparagus officinalis] | 0 |
| O22207 | Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FKL4 | Ubiquitin carboxyl-terminal hydrolase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F4330 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology