Basic Information
Locus ID:
AsparagusV1_02.327.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5234749 | 5247592 | + | AsparagusV1_02.327.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 61,548.06 Da | 36.40 | 113.46 | 0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 92 | 506 | 4.12095E-103 | IPR044644 |
| Pfam | PF14667 | Polysaccharide biosynthesis C-terminal domain | 213 | 320 | 6.3E-8 | IPR029303 |
| Pfam | PF01554 | MatE | 322 | 464 | 5.6E-15 | IPR002528 |
| SUPERFAMILY | SSF56019 | The spindle assembly checkpoint protein mad2 | 519 | 574 | 2.88E-11 | IPR036570 |
| Gene3D | G3DSA:3.30.900.10 | HORMA domain | 516 | 574 | 1.7E-14 | IPR036570 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 84 | 486 | 2.8E-88 | IPR002528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38330.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_020252763.1 | protein DETOXIFICATION 44, chloroplastic [Asparagus officinalis] | 0 |
| Q84K71 | Protein DETOXIFICATION 44, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FI78 | Protein DETOXIFICATION OS=Asparagus officinalis OX=4686 GN=A4U43_C02F3270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology