Basic Information
Locus ID:
AsparagusV1_02.285.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4279139 | 4284177 | - | AsparagusV1_02.285.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 73,750.78 Da | 56.99 | 96.32 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 69 | 1.2E-10 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 97 | 154 | 1.3E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 396 | 629 | 6.0E-21 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 370 | 649 | 4.49E-38 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 175 | 6.05E-28 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 225 | 7.8E-40 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 341 | 450 | 4.2E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 451 | 641 | 8.2E-32 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 368 | 633 | 18.096479 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18640.1 | Leucine-rich repeat protein kinase family protein. Required for root hair elongation during tip growth. | 0 |
| RefSeq | XP_020252701.1 | inactive receptor-like serine/threonine-protein kinase At2g40270 [Asparagus officinalis] | 0 |
| C0LGQ4 | Protein MALE DISCOVERER 2 OS=Arabidopsis thaliana OX=3702 GN=MDIS2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FFC4 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F2850 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology