Basic Information
Locus ID:
AsparagusV1_02.264.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3849374 | 3856633 | + | AsparagusV1_02.264.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 96,505.61 Da | 49.34 | 103.74 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 114 | 162 | 4.01123E-17 | - |
| Pfam | PF04564 | U-box domain | 113 | 181 | 1.3E-13 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 187 | 4.77E-19 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 459 | 848 | 4.53E-17 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 178 | 494 | 9.6E-29 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 179 | 1.1E-18 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 180 | 549 | 5.0E-32 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 596 | 856 | 1.5E-11 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 113 | 182 | 4.8E-19 | IPR003613 |
| SMART | SM00185 | arm_5 | 720 | 760 | 4.3 | IPR000225 |
| SMART | SM00185 | arm_5 | 186 | 230 | 100.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 395 | 439 | 0.14 | IPR000225 |
| SMART | SM00185 | arm_5 | 356 | 394 | 9.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 634 | 675 | 210.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 109 | 189 | 16.021328 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_020252681.1 | LOW QUALITY PROTEIN: U-box domain-containing protein 44-like [Asparagus officinalis] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FFA4 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F2640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6897 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027823 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1554, Sbi_jg34993 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3191, Seu_jg3192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003380 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72805, Sgl76344 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000035718, gene:ENSEOMG00000037562 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0004470, CQ.Regalona.r1.9BG0001160 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061300, pistato.v30065060 |
| Apiaceae | Apium graveolens | 1 | Ag2G00822 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003250, scaffold075410G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718312 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.264.V1.1, AsparagusV1_Unassigned.156.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1866 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1922 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.1080 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37730, Lb3G18363, Lb3G19221 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1057, evm.TU.LG24.1060 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36720 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3639 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1216 |