Basic Information
Locus ID:
AsparagusV1_02.230.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase UPL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3535041 | 3543839 | + | AsparagusV1_02.230.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 155,914.31 Da | 42.66 | 96.22 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1007 | 1393 | 2.94519E-108 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1054 | 1395 | 2.0E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 997 | 1388 | 1.27E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 6 | 394 | 3.51E-28 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 949 | 1169 | 1.0E-37 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 2 | 406 | 1.1E-38 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1277 | 1394 | 2.6E-32 | - |
| SMART | SM00119 | hect_3 | 1016 | 1395 | 5.6E-92 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1033 | 1395 | 63.217674 | IPR000569 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_020252650.1 | E3 ubiquitin-protein ligase UPL4 [Asparagus officinalis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5P1FFY5 | HECT-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F2300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology