Basic Information
Locus ID:
AsparagusV1_02.2240.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 83765173 | 83767508 | + | AsparagusV1_02.2240.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 50,847.52 Da | 50.22 | 74.53 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 104 | 420 | 4.8E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 69 | 455 | 1.41E-121 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 57 | 462 | 4.1E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 234 | 260 | 65.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 314 | 335 | 57.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 284 | 304 | 1000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 343 | 364 | 6300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 261 | 282 | 830.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 291 | 304 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_020254990.1 | polygalacturonase At1g48100 [Asparagus officinalis] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FL17 | Polygalacturonase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F22400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology