Basic Information
Locus ID:
AsparagusV1_02.2176.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 82610125 | 82619517 | - | AsparagusV1_02.2176.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 57,448.68 Da | 50.88 | 83.27 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 329 | 506 | 3.95162E-113 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 98 | 1.0E-10 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 329 | 435 | 4.5E-16 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 331 | 462 | 4.32E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 319 | 508 | 2.7E-73 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 123 | 6.9E-35 | - |
| SMART | SM00232 | pad1_6 | 331 | 459 | 2.6E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 331 | 462 | 30.017885 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 150 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_020254927.1 | AMSH-like ubiquitin thioesterase 3 [Asparagus officinalis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FLW1 | MPN domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F21760 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology