Basic Information
Locus ID:
AsparagusV1_02.2169.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 82483483 | 82491193 | + | AsparagusV1_02.2169.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 71,789.70 Da | 40.98 | 74.04 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 442 | 575 | 2.25423E-63 | - |
| CDD | cd17920 | DEXHc_RecQ | 244 | 441 | 1.47509E-97 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 253 | 421 | 7.6E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 457 | 565 | 1.0E-14 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 578 | 647 | 1.2E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 290 | 586 | 1.08E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 442 | 649 | 1.5E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 215 | 441 | 9.8E-82 | IPR027417 |
| SMART | SM00487 | ultradead3 | 246 | 450 | 6.7E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 484 | 566 | 2.9E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 244 | 649 | 8.5E-153 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 258 | 434 | 20.348864 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 456 | 609 | 18.490906 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 373 | 382 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 185 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_020254918.1 | ATP-dependent DNA helicase Q-like 1 isoform X1 [Asparagus officinalis] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FK73 | ATP-dependent DNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F21690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology