Basic Information
Locus ID:
AsparagusV1_02.1942.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Structural maintenance of chromosomes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 77266233 | 77270863 | - | AsparagusV1_02.1942.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 24,794.06 Da | 34.90 | 92.53 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03277 | ABC_SMC5_euk | 25 | 127 | 1.99725E-63 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 15 | 103 | 1.55E-11 | IPR027417 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 123 | 221 | 1.1E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 122 | 9.4E-20 | IPR027417 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15920.1 | structural maintenance of chromosomes 5. Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage. | 0 |
| RefSeq | XP_020254610.1 | structural maintenance of chromosomes protein 5 [Asparagus officinalis] | 0 |
| Q9LFS8 | Structural maintenance of chromosomes protein 5 OS=Arabidopsis thaliana OX=3702 GN=SMC5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FNF0 | Structural maintenance of chromosomes protein 5 OS=Asparagus officinalis OX=4686 GN=A4U43_C02F19420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25002 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016593 |
| Apiaceae | Apium graveolens | 2 | Ag6G01107, Ag7G00868 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G018220 |
| Asparagaceae | Asparagus officinalis | 7 | AsparagusV1_01.1982.V1.1, AsparagusV1_02.1875.V1.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5862 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24943 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17193 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.52 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012202 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9094 |