Basic Information
Locus ID:
AsparagusV1_02.1595.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 60183209 | 60184351 | + | AsparagusV1_02.1595.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 41,803.05 Da | 40.69 | 70.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 101 | 351 | 4.84171E-46 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 97 | 153 | 3.6E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 213 | 4.8E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 228 | 266 | 0.0017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 350 | 8.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 351 | 6.96E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 354 | 3.5E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 269 | 309 | 8.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 90 | 129 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 170 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 266 | 8.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 213 | 6.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 312 | 351 | 2.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 215 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 319 | 352 | 10.811958 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 32 | 7.0 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 319 | 352 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 222 | 13.315579 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 200 | 214 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_020253664.1 | cell division cycle 20.2, cofactor of APC complex-like [Asparagus officinalis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FIS8 | ANAPC4_WD40 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F15950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology