Basic Information
Locus ID:
AsparagusV1_02.1325.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 42439629 | 42441020 | + | AsparagusV1_02.1325.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 51,572.14 Da | 44.27 | 66.61 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 162 | 434 | 6.91164E-49 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 6.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 349 | 0.0023 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 179 | 236 | 6.6E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 399 | 433 | 1.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 130 | 437 | 7.45E-63 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 93 | 437 | 8.9E-119 | IPR015943 |
| SMART | SM00320 | WD40_4 | 395 | 434 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 257 | 296 | 6.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 349 | 8.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 2.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 352 | 392 | 8.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 264 | 298 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 264 | 305 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 402 | 435 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 402 | 435 | 13.014815 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 283 | 297 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 79 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_020253664.1 | cell division cycle 20.2, cofactor of APC complex-like [Asparagus officinalis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FM18 | ANAPC4_WD40 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C02F13250 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology