Basic Information
Locus ID:
AsparagusV1_02.1219.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 35542265 | 35578330 | - | AsparagusV1_02.1219.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 113,797.34 Da | 41.01 | 84.50 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 40 | 317 | 0.0 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 607 | 820 | 7.6E-44 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1007 | 4.7E-11 | IPR041147 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 41 | 353 | 1.2E-92 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 358 | 449 | 2.4E-20 | IPR015341 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 29 | 356 | 7.78E-107 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1011 | 9.57E-145 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 451 | 1.18E-27 | IPR028995 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 868 | 1.5E-93 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 322 | 400 | 1.1E-31 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 599 | 4.2E-28 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 40 | 321 | 6.7E-121 | IPR027291 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1015 | 3.3E-37 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 455 | 1.1E-21 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 358 | 432 | 4.4E-23 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_020253571.1 | probable alpha-mannosidase At5g13980 isoform X1 [Asparagus officinalis] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FMR1 | Alpha-mannosidase OS=Asparagus officinalis OX=4686 GN=A4U43_C02F12190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology