Basic Information
Locus ID:
AsparagusV1_02.1049.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UBP15
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 25729228 | 25731490 | + | AsparagusV1_02.1049.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 21,539.43 Da | 35.51 | 86.97 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 138 | 178 | 3.1E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 32 | 122 | 1.57E-7 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 136 | 180 | 8.02E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 15 | 124 | 2.0E-8 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 131 | 180 | 6.3E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 136 | 178 | 10.824879 | IPR002893 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50450.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_029129677.1 | F-box protein At1g67340 [Cajanus cajan] | 0 |
| Q9FK27 | F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FI59 | MYND-type domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C02F10490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology