Basic Information
Locus ID:
AsparagusV1_01.836.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15719831 | 15724860 | - | AsparagusV1_01.836.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 52,194.93 Da | 61.32 | 87.81 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 243 | 291 | 6.58727E-15 | - |
| Pfam | PF12906 | RING-variant domain | 243 | 290 | 7.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 294 | 1.31E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 298 | 3.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 242 | 291 | 2.2E-17 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 291 | 8.756769 | IPR001841 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 235 | 297 | 19.4918 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020240793.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X2 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FPJ6 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F8360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology