Basic Information
Locus ID:
AsparagusV1_01.833.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 15685608 | 15687515 | + | AsparagusV1_01.833.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 72,576.04 Da | 46.79 | 75.34 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 508 | 625 | 1.4E-34 | IPR032867 |
| Pfam | PF13041 | PPR repeat family | 343 | 376 | 4.0E-7 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 418 | 438 | 0.28 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 385 | 487 | 1.0E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 262 | 384 | 4.5E-21 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 343 | 375 | 2.7E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | 11.629997 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 73 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_020240769.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like isoform X1 [Asparagus officinalis] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FSJ0 | DYW_deaminase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F8330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology