Basic Information
Locus ID:
AsparagusV1_01.706.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 12914676 | 12917445 | + | AsparagusV1_01.706.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 68,550.72 Da | 43.41 | 101.93 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 260 | 302 | 7.63467E-29 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 423 | 462 | 1.2E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 466 | 503 | 1.2E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 385 | 421 | 4.0E-10 | IPR000225 |
| Pfam | PF04564 | U-box domain | 256 | 326 | 1.4E-22 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 346 | 626 | 6.91E-49 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 330 | 2.79E-30 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 129 | 5.0E-9 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 328 | 488 | 1.0E-33 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 327 | 5.3E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 492 | 631 | 2.9E-20 | IPR011989 |
| SMART | SM00185 | arm_5 | 464 | 504 | 0.024 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 259 | 322 | 8.5E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 505 | 545 | 65.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 381 | 422 | 1.6E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 546 | 586 | 6.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 423 | 463 | 0.0079 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 255 | 329 | 44.044506 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 434 | 476 | 9.3624 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 393 | 435 | 13.5274 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_020276222.1 | U-box domain-containing protein 12 [Asparagus officinalis] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FQ11 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F7060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology