Basic Information
Locus ID:
AsparagusV1_01.621.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 11301650 | 11305957 | + | AsparagusV1_01.621.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 35,456.06 Da | 47.03 | 89.05 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 44 | 242 | 1.2335E-137 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 65 | 226 | 2.7E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 219 | 296 | 7.49E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 34 | 244 | 3.52E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 249 | 303 | 1.3E-9 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 30 | 248 | 6.1E-67 | IPR027417 |
| SMART | SM00487 | ultradead3 | 59 | 256 | 3.2E-55 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 40 | 68 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | 28.189253 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_020275241.1 | eukaryotic initiation factor 4A-1-like [Asparagus officinalis] | 0 |
| P35683 | Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FMT0 | RNA helicase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F6210 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology