Basic Information
Locus ID:
AsparagusV1_01.502.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9336388 | 9340806 | + | AsparagusV1_01.502.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 33,143.60 Da | 44.74 | 67.63 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 147 | 275 | 1.62379E-67 | - |
| CDD | cd16571 | RING-HC_SIAHs | 31 | 69 | 1.21662E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 75 | 274 | 7.1E-80 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 86 | 278 | 2.62E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 73 | 1.06E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 138 | 274 | 2.5E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 14 | 85 | 4.4E-6 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 137 | 7.7E-18 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 86 | 146 | 14.074587 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 33 | 69 | 9.376395 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_020274003.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SINAT5-like [Asparagus officinalis] | 0 |
| Q8S3N1 | E3 ubiquitin-protein ligase SINAT5 OS=Arabidopsis thaliana OX=3702 GN=SINAT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FLV8 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F5020 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology