Basic Information
Locus ID:
AsparagusV1_01.472.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Receptor protein kinase CLAVATA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8786752 | 8790237 | - | AsparagusV1_01.472.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 68,288.49 Da | 30.77 | 100.06 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 66 | 127 | 5.7E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 329 | 599 | 5.0E-45 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 1 | 249 | 4.31E-51 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 323 | 601 | 1.75E-73 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 259 | 3.3E-75 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 295 | 404 | 1.6E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 405 | 608 | 3.7E-59 | - |
| SMART | SM00220 | serkin_6 | 327 | 599 | 1.9E-32 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 327 | 606 | 36.838165 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 449 | 461 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_020273704.1 | LOW QUALITY PROTEIN: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Asparagus officinalis] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1FLT2 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F4720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology