Basic Information
Locus ID:
AsparagusV1_01.459.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8596694 | 8601091 | + | AsparagusV1_01.459.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 29,059.33 Da | 39.13 | 64.93 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 35 | 263 | 5.1E-76 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 160 | 253 | 5.3E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 157 | 266 | 5.4E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 162 | 254 | 26.401651 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.1 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | XP_020273570.1 | auxin-responsive protein IAA17-like [Asparagus officinalis] | 0 |
| Q38826 | Auxin-responsive protein IAA8 OS=Arabidopsis thaliana OX=3702 GN=IAA8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FMB0 | Auxin-responsive protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F4590 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology