Basic Information
Locus ID:
AsparagusV1_01.3634.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
JAB/MPN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 132251473 | 132257836 | + | AsparagusV1_01.3634.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 40,717.40 Da | 62.16 | 71.50 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 150 | 321 | 1.39613E-92 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 149 | 256 | 4.6E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 153 | 282 | 3.66E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 130 | 327 | 2.3E-66 | - |
| SMART | SM00232 | pad1_6 | 152 | 280 | 4.4E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 153 | 281 | 29.950621 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 349 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_020251277.1 | AMSH-like ubiquitin thioesterase 2 isoform X1 [Asparagus officinalis] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FVI5 | MPN domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F36340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology