Basic Information
Locus ID:
AsparagusV1_01.3391.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 127923599 | 127943292 | + | AsparagusV1_01.3391.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 127,776.11 Da | 43.09 | 77.81 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 167 | 495 | 6.42514E-168 | - |
| CDD | cd00121 | MATH | 25 | 150 | 5.68853E-41 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 169 | 490 | 4.5E-46 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 594 | 846 | 3.2E-77 | IPR024729 |
| Pfam | PF00917 | MATH domain | 31 | 151 | 2.4E-21 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 856 | 1066 | 2.8E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 164 | 520 | 1.0E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 22 | 156 | 1.8E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 772 | 869 | 1.6E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 654 | 771 | 5.0E-47 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 166 | 494 | 5.3E-89 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 23 | 165 | 1.8E-54 | IPR008974 |
| SMART | SM00061 | math_3 | 26 | 130 | 2.0E-19 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 169 | 493 | 40.117573 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 24 | 149 | 38.059464 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 170 | 185 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 409 | 426 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| Coils | Coil | Coil | 509 | 529 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_020265835.1 | ubiquitin carboxyl-terminal hydrolase 12-like [Asparagus officinalis] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FXI1 | ubiquitinyl hydrolase 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F33910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology