Basic Information
Locus ID:
AsparagusV1_01.3176.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 123121995 | 123126213 | - | AsparagusV1_01.3176.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 51,245.69 Da | 44.41 | 65.48 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 335 | 378 | 8.0738E-17 | - |
| Pfam | PF14599 | Zinc-ribbon | 383 | 440 | 3.2E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 335 | 377 | 1.2E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 207 | 282 | 5.8E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 333 | 390 | 1.32E-8 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 202 | 263 | 2.48E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 273 | 328 | 5.1E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 406 | 447 | 2.9E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 380 | 1.8E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 336 | 377 | 4.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 336 | 378 | 10.895954 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 272 | 335 | 28.737217 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 200 | 269 | 24.190212 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_020257744.1 | LOW QUALITY PROTEIN: zinc finger protein BRUTUS-like [Asparagus officinalis] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FTY1 | RING finger and CHY zinc finger domain-containing protein 1 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F31760 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology