Basic Information
Locus ID:
AsparagusV1_01.3069.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 119821578 | 119822810 | - | AsparagusV1_01.3069.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 43,799.41 Da | 54.60 | 91.85 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 224 | 284 | 2.2E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 105 | 165 | 2.6E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 67 | 5.0E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 46 | 290 | 4.86E-39 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 201 | 4.4E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 307 | 7.6E-16 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 154 | 175 | 7.365424 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 247 | 260 | 6.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 155 | 168 | 6.4E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020264741.1 | probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FV70 | LRRNT_2 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F30690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology