Basic Information
Locus ID:
AsparagusV1_01.2975.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
AMSH-like ubiquitin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 116824574 | 116842189 | - | AsparagusV1_01.2975.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 57,852.73 Da | 49.57 | 82.34 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 333 | 508 | 2.79616E-110 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 7 | 97 | 5.1E-10 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 330 | 437 | 1.7E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 333 | 464 | 1.96E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 317 | 508 | 2.1E-71 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 126 | 1.0E-28 | - |
| SMART | SM00232 | pad1_6 | 333 | 461 | 1.7E-21 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 334 | 464 | 30.728958 | IPR037518 |
| Coils | Coil | Coil | 88 | 108 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_020251866.1 | AMSH-like ubiquitin thioesterase 1 isoform X1 [Asparagus officinalis] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FVJ1 | MPN domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F29750 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology