Basic Information
Locus ID:
AsparagusV1_01.2909.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 114971820 | 114987894 | + | AsparagusV1_01.2909.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 46,007.39 Da | 42.30 | 92.59 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 21 | 101 | 2.6E-11 | IPR020683 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 138 | 383 | 9.3E-32 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 136 | 385 | 4.29E-41 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 19 | 106 | 3.26E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 104 | 2.1E-22 | IPR036770 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 112 | 393 | 1.9E-44 | - |
| SMART | SM00248 | ANK_2a | 81 | 112 | 770.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 48 | 77 | 3.8E-7 | IPR002110 |
| PIRSF | PIRSF000654 | ILK | 2 | 396 | 8.8E-94 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 48 | 80 | 12.99165 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 389 | 24.301306 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 48 | 80 | 14.372149 | IPR002110 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G18950.2 | - | 0 |
| RefSeq | XP_020251788.1 | integrin-linked protein kinase homolog pat-4-like [Asparagus officinalis] | 0 |
| Q93Z30 | Serine/threonine-protein kinase 12 OS=Arabidopsis thaliana OX=3702 GN=BHP PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FT87 | Protein kinase domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F29090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag4G00547 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2909.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G12649 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029649, Pov_00029657 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.720, evm.TU.Scaffold_3_RagTag.721 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1240 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13793 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6407 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.778 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012750 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5245 |
| Salicaceae | Populus euphratica | 1 | populus_peu24920 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623793 |
| Solanaceae | Solanum chilense | 1 | SOLCI007409100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009611 |