Basic Information
Locus ID:
AsparagusV1_01.27.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
DNA repair protein RAD23-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 284343 | 289689 | - | AsparagusV1_01.27.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 10,932.45 Da | 38.86 | 91.41 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.15032E-27 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.4E-18 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 6.91E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.0E-27 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.4E-20 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.867594 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_020269801.1 | LOW QUALITY PROTEIN: ubiquitin receptor RAD23b-like [Asparagus officinalis] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1FKE9 | Ubiquitin-like domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology