Basic Information
Locus ID:
AsparagusV1_01.2685.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 108742495 | 108748410 | - | AsparagusV1_01.2685.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 44,277.67 Da | 52.98 | 76.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 60 | 295 | 5.3281E-180 | - |
| Pfam | PF00850 | Histone deacetylase domain | 67 | 293 | 4.0E-77 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 66 | 349 | 1.29E-106 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 27 | 361 | 2.2E-116 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 54 | 393 | 9.4E-173 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 145 | 160 | 4.2E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 230 | 240 | 4.2E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 113 | 136 | 4.2E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 70 | 87 | 4.3E-44 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 191 | 204 | 4.3E-44 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 132 | 148 | 4.3E-44 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 91 | 111 | 4.3E-44 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 208 | 226 | 4.3E-44 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 64 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_020251491.1 | LOW QUALITY PROTEIN: histone deacetylase 6-like [Asparagus officinalis] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FUY6 | Histone deacetylase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F26850 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology