Basic Information
Locus ID:
AsparagusV1_01.2680.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 108655635 | 108670117 | - | AsparagusV1_01.2680.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 98,476.46 Da | 42.50 | 77.64 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 408 | 464 | 4.01338E-27 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 409 | 463 | 1.1E-10 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 473 | 832 | 5.5E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 165 | 269 | 1.1E-8 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 398 | 470 | 1.28E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 305 | 833 | 2.11E-74 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 627 | 799 | 1.3E-224 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 97 | 256 | 1.3E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 306 | 850 | 1.3E-224 | - |
| SMART | SM00298 | chromo_7 | 408 | 467 | 6.6E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 156 | 271 | 2.5E-8 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 304 | 840 | 43.979248 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 156 | 271 | 16.757236 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 409 | 462 | 12.448901 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 432 | 452 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 568 | 581 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 305 | 321 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 522 | 536 | 1.1E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020251487.1 | DNA (cytosine-5)-methyltransferase CMT3-like isoform X3 [Asparagus officinalis] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FT11 | DNA (cytosine-5-)-methyltransferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F26800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology