Basic Information
Locus ID:
AsparagusV1_01.2600.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
GLT
Description:
L-glutamate biosynthetic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 106116637 | 106117758 | + | AsparagusV1_01.2600.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 27,210.15 Da | 50.55 | 93.07 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61730.1 | reduced male fertility. Encodes a nuclear localized F-box protein that is involved in tapetal layer degeneration and pollen development. Interacts with ASK1 and that interaction is mediated by the F-box domain. | 0 |
| RefSeq | XP_020262831.1 | probable F-box protein At3g61730 [Asparagus officinalis] | 0 |
| Q9M365 | Probable F-box protein At3g61730 OS=Arabidopsis thaliana OX=3702 GN=RMF PE=1 SV=2 | 0 | |
| TrEMBL | A0A5P1FSH0 | F-box protein At3g61730 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F26000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23547 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3960, Sbi_jg49173 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6070 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000577 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10914, Sgl16268 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015309, gene:ENSEOMG00000034785 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0002120, CQ.Regalona.r1.1AG0003620 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005770 |
| Apiaceae | Apium graveolens | 3 | Ag11G04909, Ag6G01553, Ag8G01101 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G002940 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703047, gene-LOC120108259 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2600.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13570 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61730.1, AT3G62500.1, AT5G36000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006430m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g052820.2N, BniB06g061850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1267 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1308 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01720 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.707 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00016587, Pov_00016588 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03662 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.176, AH02.532, BH02.168, CH02.194, CH05.1612 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_1AG0001640, gene-QOZ80_1AG0007050 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051354 |
| Poaceae | Oryza coarctata | 2 | Oco01G005200, Oco02G005250 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G015000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204954, Pt_Chr0206802 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr03G000210, Chr08G000240, Chr14G016870, Chr21G015800 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G260200, Tel4E01G032500, Tel4E01G284600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1BG032410, gene_TRIDC3AG019130 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G144000.1, TraesCS3B02G170600.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb119810_P001, Zm00001eb308970_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24329 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9552 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1277, evm.TU.LG24.1276 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc09g09100, gene.Posoc09g09180, gene.Posoc09g09190 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.602 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21615 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.207 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017768 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1704 |
| Salicaceae | Populus euphratica | 2 | populus_peu27565, populus_peu31562 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599972 |
| Solanaceae | Solanum chilense | 1 | SOLCI004966500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_732 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1954 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06460.v3.1 |