Basic Information
Locus ID:
AsparagusV1_01.251.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4659120 | 4664364 | - | AsparagusV1_01.251.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 83,875.43 Da | 39.99 | 89.44 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 46 | 344 | 4.16185E-162 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 361 | 661 | 4.23466E-151 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 366 | 657 | 5.6E-36 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 360 | 661 | 3.14E-45 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 45 | 344 | 4.97E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 45 | 345 | 2.8E-30 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 359 | 662 | 1.5E-49 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 46 | 345 | 31.260014 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 361 | 662 | 34.89782 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 739 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_020271583.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Asparagus officinalis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5P1FLQ0 | glycerophosphodiester phosphodiesterase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F2510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology