Basic Information
Locus ID:
AsparagusV1_01.2439.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 98683591 | 98686694 | - | AsparagusV1_01.2439.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 100,537.04 Da | 36.24 | 100.20 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 152 | 438 | 4.37522E-103 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 464 | 664 | 6.8555E-111 | - |
| Pfam | PF00005 | ABC transporter | 482 | 616 | 1.0E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 156 | 417 | 2.9E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 772 | 899 | 1.7E-13 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 149 | 450 | 8.37E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 758 | 900 | 8.11E-20 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 460 | 686 | 1.33E-56 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 733 | 903 | 5.5E-26 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 128 | 446 | 2.2E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 449 | 698 | 3.8E-75 | IPR027417 |
| SMART | SM00382 | AAA_5 | 491 | 672 | 1.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 153 | 430 | 33.533089 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 464 | 687 | 21.828844 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 772 | 899 | 18.146963 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 589 | 603 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 738 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_020251288.1 | ABC transporter C family member 3-like [Asparagus officinalis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FSE9 | ABC transporter C family member 3 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F24390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology