Basic Information
Locus ID:
AsparagusV1_01.2388.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 95913243 | 95922297 | + | AsparagusV1_01.2388.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 35,082.18 Da | 48.47 | 90.88 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 53 | 104 | 1.10844E-19 | - |
| Pfam | PF12906 | RING-variant domain | 53 | 103 | 1.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 108 | 1.18E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 117 | 7.5E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 52 | 104 | 1.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 45 | 110 | 21.523367 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020251132.1 | uncharacterized protein LOC109828579 isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FRN0 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F23880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology