Basic Information
Locus ID:
AsparagusV1_01.1665.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54128246 | 54147355 | - | AsparagusV1_01.1665.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 43,796.48 Da | 41.73 | 86.89 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 177 | 0.093 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 352 | 0.067 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 50 | 356 | 6.75E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 48 | 360 | 1.6E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 178 | 0.24 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_020246517.1 | SEC12-like protein 2 [Asparagus officinalis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5P1FQP3 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F16650 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology