Basic Information
Locus ID:
AsparagusV1_01.1635.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
CMT1
Description:
DNA (cytosine-5)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 52582601 | 52600674 | + | AsparagusV1_01.1635.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 95,511.95 Da | 44.52 | 78.92 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 416 | 472 | 9.5436E-28 | - |
| Pfam | PF01426 | BAH domain | 174 | 282 | 1.2E-8 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 481 | 829 | 3.8E-36 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 433 | 470 | 4.3E-8 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 404 | 478 | 2.58E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 315 | 831 | 1.82E-78 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 317 | 849 | 6.1E-238 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 635 | 798 | 6.1E-238 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 112 | 276 | 4.0E-47 | IPR043151 |
| SMART | SM00439 | BAH_4 | 172 | 291 | 9.6E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 416 | 475 | 4.9E-6 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 485 | 828 | 5.1E-31 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 417 | 470 | 11.779201 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 315 | 839 | 46.006294 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 172 | 291 | 16.073338 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 440 | 460 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 487 | 499 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 316 | 332 | 1.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 530 | 544 | 1.3E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 576 | 589 | 1.3E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020246348.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Asparagus officinalis] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FUH2 | Cytosine-specific methyltransferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F16350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology