Basic Information
Locus ID:
AsparagusV1_01.1567.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 48845029 | 48847994 | - | AsparagusV1_01.1567.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 17,574.01 Da | 46.97 | 88.59 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 37 | 86 | 4.80726E-12 | - |
| Pfam | PF12906 | RING-variant domain | 37 | 85 | 4.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 88 | 2.65E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 94 | 3.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 36 | 86 | 6.6E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 29 | 92 | 19.375122 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_020266816.1 | uncharacterized protein LOC109842333 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FTC1 | RING-CH-type domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F15670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology