Basic Information
Locus ID:
AsparagusV1_01.1544.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 47361287 | 47366598 | - | AsparagusV1_01.1544.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 86,133.34 Da | 54.37 | 71.17 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 154 | 214 | 5.7E-16 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 262 | 412 | 1.1E-49 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 453 | 679 | 9.1E-72 | IPR031595 |
| Gene3D | G3DSA:3.40.50.11980 | - | 471 | 645 | 1.0E-191 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 261 | 682 | 1.0E-191 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | 8.911594 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 709 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 691 | 730 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 159 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_020245596.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like isoform X1 [Asparagus officinalis] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FTA2 | ribonuclease P OS=Asparagus officinalis OX=4686 GN=A4U43_C01F15440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology