Basic Information
Locus ID:
AsparagusV1_01.1508.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 44600953 | 44603955 | - | AsparagusV1_01.1508.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 40,684.69 Da | 30.34 | 85.05 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 96 | 123 | 0.0077 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 184 | 217 | 5.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 367 | 3.52E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 69 | 247 | 1.1E-53 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 248 | 368 | 7.3E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 135 | 174 | 4.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 366 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 124 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 217 | 3.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 263 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 272 | 311 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 184 | 219 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 184 | 219 | 10.337415 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 204 | 218 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 204 | 218 | 6.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 6.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 250 | 264 | 6.0E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.4 | - | 0 |
| RefSeq | XP_020245350.1 | LOW QUALITY PROTEIN: protein SPA1-RELATED 3-like [Asparagus officinalis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FPQ0 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F15080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology