Basic Information
Locus ID:
AsparagusV1_01.1346.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
UBC25
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33406122 | 33426008 | + | AsparagusV1_01.1346.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.55 | 40,052.21 Da | 36.05 | 64.03 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 117 | 179 | 3.6E-11 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 97 | 179 | 2.07E-21 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 76 | 179 | 3.6E-31 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 112 | 179 | 14.731324 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 289 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53025.1 | Ubiquitin-conjugating enzyme family protein. | 0 |
| RefSeq | XP_020244427.1 | putative ubiquitin-conjugating enzyme E2 38 [Asparagus officinalis] | 0 |
| Q8GY87 | Probable ubiquitin-conjugating enzyme E2 26 OS=Arabidopsis thaliana OX=3702 GN=UBC26 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5P1FRK9 | UBC core domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F13460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology