Basic Information
Locus ID:
AsparagusV1_01.1335.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 33095514 | 33097046 | + | AsparagusV1_01.1335.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 59,180.40 Da | 54.47 | 71.72 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 191 | 253 | 4.8E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 276 | 318 | 2.3E-7 | IPR002867 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 120 | 156 | 1.5E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 272 | 323 | 1.0E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 203 | 8.67E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 260 | 4.95E-13 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 249 | 478 | 2.0E-55 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 205 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 169 | 0.11 | IPR001841 |
| SMART | SM00184 | ring_2 | 210 | 283 | 0.85 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 265 | 320 | 0.044 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 190 | 253 | 3.5E-18 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 116 | 330 | 42.991096 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 167 | 10.305834 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 137 | 146 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 235 | 244 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_020256202.1 | probable E3 ubiquitin-protein ligase ARI8 [Asparagus officinalis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FP20 | RBR-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F13350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology