Basic Information
Locus ID:
AsparagusV1_01.131.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1974477 | 1980094 | + | AsparagusV1_01.131.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 74,162.69 Da | 40.57 | 84.34 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 113 | 152 | 0.0061 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 85 | 109 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 522 | 556 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 82 | 556 | 2.75E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 163 | 7.7E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 164 | 316 | 5.1E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 414 | 661 | 2.6E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 202 | 242 | 0.96 | IPR001680 |
| SMART | SM00320 | WD40_4 | 612 | 651 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 435 | 472 | 71.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 112 | 153 | 9.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 557 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 475 | 515 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 199 | 3.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 556 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 9.171722 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 119 | 153 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 556 | 9.203785 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_020251778.1 | topless-related protein 1-like [Asparagus officinalis] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5P1FND6 | WD_REPEATS_REGION domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F1310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg11622 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011711, gene:ENSEOMG00000016261 ... |
| Anacardiaceae | Pistacia vera | 5 | pistato.v30099560, pistato.v30099680, pistato.v30099790 ... |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G007850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700149 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_01.1301.V1.1, AsparagusV1_01.131.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G19082 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028234 |
| Poaceae | Echinochloa crus-galli | 1 | CH08.491 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054200 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G011510 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g25450 |
| Salicaceae | Populus euphratica | 1 | populus_peu12947 |
| Solanaceae | Solanum chilense | 3 | SOLCI001994800, SOLCI005587600, SOLCI005587700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013672, gene-LOC107014302 |