Basic Information
Locus ID:
AsparagusV1_01.130.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1959210 | 1974453 | + | AsparagusV1_01.130.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 50,516.71 Da | 54.64 | 87.08 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 6 | 33 | 1.8E-8 | - |
| SMART | SM00668 | ctlh | 33 | 91 | 2.2E-8 | IPR006595 |
| SMART | SM00667 | Lish | 3 | 35 | 0.0019 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 3 | 35 | 9.410237 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 33 | 91 | 11.301373 | IPR006595 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.1 | TOPLESS-related 1. | 0 |
| RefSeq | XP_020251778.1 | topless-related protein 1-like [Asparagus officinalis] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FKU5 | CTLH domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F1300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 5 | Sgl13166, Sgl15271, Sgl18389, Sgl35793, Sgl63808 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4BG0018880 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30080030, pistato.v30081240, pistato.v30099810 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G010590 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.130.V1.1, AsparagusV1_03.1555.V1.1 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr29G011090 |
| Poaceae | Zea mays | 1 | Zm00001eb019610_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39020 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22323 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132639592 |