Basic Information
Locus ID:
AsparagusV1_01.1218.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
zinc finger, C3HC4 type domain containing protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26990546 | 26991742 | + | AsparagusV1_01.1218.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 44,605.29 Da | 66.80 | 72.01 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 190 | 234 | 2.37684E-28 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 192 | 232 | 2.3E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 245 | 6.24E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 282 | 2.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 192 | 232 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 192 | 233 | 13.049892 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 207 | 216 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 161 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 398 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020243632.1 | postreplication repair E3 ubiquitin-protein ligase RAD18-like [Asparagus officinalis] | 0 |
| O35445 | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FQF7 | RING-type E3 ubiquitin transferase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F12180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology