Basic Information
Locus ID:
AsparagusV1_01.116.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1796356 | 1802680 | - | AsparagusV1_01.116.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 72,182.80 Da | 29.86 | 105.04 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 516 | 616 | 1.3737E-25 | - |
| CDD | cd00030 | C2 | 336 | 438 | 5.58554E-25 | - |
| Pfam | PF00168 | C2 domain | 334 | 438 | 1.1E-21 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 142 | 320 | 2.0E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 514 | 615 | 2.1E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 511 | 631 | 9.11E-30 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 332 | 464 | 3.99E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 327 | 462 | 1.9E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 496 | 632 | 2.4E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 515 | 613 | 1.1E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 335 | 435 | 7.7E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 495 | 614 | 20.151022 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 137 | 321 | 27.383385 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 315 | 436 | 19.980581 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_020270588.1 | synaptotagmin-5-like [Asparagus officinalis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5P1FKT7 | Synaptotagmin-4 OS=Asparagus officinalis OX=4686 GN=A4U43_C01F1160 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology