Basic Information
Locus ID:
AsparagusV1_01.114.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
Translocase of chloroplast 90
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1785617 | 1788359 | + | AsparagusV1_01.114.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 73,867.76 Da | 38.96 | 86.14 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04548 | AIG1 family | 159 | 312 | 7.5E-22 | IPR006703 |
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 486 | 643 | 2.0E-61 | IPR024283 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 156 | 292 | 2.04E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 379 | 2.2E-54 | IPR027417 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 155 | 385 | 27.842749 | IPR006703 |
| Coils | Coil | Coil | 468 | 488 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_020270577.1 | translocase of chloroplast 90, chloroplastic-like isoform X2 [Asparagus officinalis] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FMG7 | AIG1-type G domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_C01F1140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology