Basic Information
Locus ID:
AsparagusV1_01.106.V1.1
Species & Taxonomic ID:
Asparagus officinalis & 4686
Genome Assembly:
GCA_001876935.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1669597 | 1684953 | + | AsparagusV1_01.106.V1.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.03 | 143,789.09 Da | 39.83 | 82.84 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 542 | 576 | 5.7E-4 | IPR001680 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 1219 | 1261 | 6.3E-6 | IPR005174 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1004 | 1036 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 430 | 751 | 1.62E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 907 | 1142 | 1.03E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 600 | 781 | 6.9E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 402 | 599 | 9.7E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 888 | 1144 | 8.5E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 490 | 529 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1089 | 1130 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 535 | 576 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 952 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 669 | 709 | 4.4 | IPR001680 |
| SMART | SM00667 | Lish | 90 | 122 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 998 | 1037 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 666 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 955 | 995 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 620 | 0.047 | IPR001680 |
| SMART | SM00668 | ctlh | 120 | 178 | 5.7E-15 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 90 | 122 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 542 | 585 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1005 | 1046 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1005 | 1036 | 9.678328 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 120 | 178 | 13.862226 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 563 | 577 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 397 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_020270506.1 | protein TPR3-like isoform X4 [Asparagus officinalis] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5P1FKS7 | TOPLESS OS=Asparagus officinalis OX=4686 GN=A4U43_C01F1060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology